Rhizobial and non-Rhizobial nodulators of Pueraria phaseoloides

M. M. Wedage1, D. Gunawardana1,2

1Department of Botany, University of Sri Jayewardenepura, Sri Lanka.

2 Corresponding author (E-mail) – dilanthag_12@yahoo.com.au

 Abstract

 Pueraria phaseoloides is a widely grown legume cover crop in Sri Lanka. Nitrogen fixation is performed by nodular inhabitants of this cover crop. We endeavored to isolate the whole array of diazotrophs colonizing the root nodules of this economically-significant cover crop. Four isolates were isolated by streaking a macerate of an active nodule from Pueraria phaseoloides and the identification of Rhizobial and Non-Rhizobial species was carried out using colony and cell morphology. One isolate from Pueraria phaseoloides (Sub 1), a gram negative bacterium contoured by a coccobacillus cell shape, (suggesting a likely non-Rhizobial identity), was a potent nodulator of Pueraria phaseoloides seedlings. A further three cultures (Sub 2, Sub 3 and Sub 4) too were able to nodulate Pueraria phaseoloides seedlings but were not as effective as Sub 1 in their nodulation potency. All four bacteria secreted to the extra-cellular medium cellulases suggesting their likely involvement in nodule formation and also showed characteristic patterns of motility to the chemoattractant proline. DNA extracted from Sub 1, Sub 3 and Sub 4 gave a PCR amplicon of the anticipated size (360 bp) using universal nifH primers, which indicated that the genetic foundation for the production of a unit of the nitrogenase enzyme, was found in the genome of these isolates.  In summary, we have unearthed here, a strong, likely non-Rhizobial nodulator, in the legume cover crop Pueraria phaseoloides, and three other bacilli bacteria, perhaps Rhizobia, capable of efficient nodulation. Further characterization of these isolates using molecular biology tools is ongoing.

Estimates of the apparent net mineralisation of legume N and comparisons of the subsequent recovery of legume or fertiliser nitrogen by wheat

Mark Peoples1, Tony Swan1, Laura Goward1, James Hunt1,2

1 CSIRO Agriculture & Food, Black Mountain Laboratories, GPO Box 1600 Canberra, ACT 2601, Australia; mark.peoples@csiro.au

2 Current address: Department of Animal, Plant and Soil Sciences, La Trobe University, Bundoora, VIC 3086, Australia

Abstract

Results from experimentation undertaken near Junee in southern New South Wales, Australia indicated that concentrations of soil mineral (inorganic) nitrogen (N) measured just prior to sowing wheat in 2012 (0-1.6m) were 42 or 92 kg N/ha greater following lupin grown for either grain or brown manure (BM) than where the preceding crop in 2011 had been wheat or canola. The apparent net mineralisation of lupin organic N over the 2011/12 summer fallow was calculated to be equivalent to 0.11-0.18 kg N/ha per mm rainfall and 7-11 kg mineral N per tonne lupin shoot residue dry matter (DM), representing 22-32% of the total residue N estimated to be remaining at the end of the 2011 growing season. The higher concentrations of soil mineral N after the 2011 lupin treatments resulted in 55-80 kg N/ha more N being accumulated by the 2012 wheat crop (50-74% increase) compared to wheat following wheat and improved grain protein contents from ~9.8% to 12.4-13.6%. The additional N uptake was equivalent to 28% of the lupin residue N from 2011. The uptake of N by wheat grown after either the 2011 wheat or canola treatments was 25-30 kg N/ha higher (21-28% increase) when top-dressed with an additional 51 kg fertiliser-N/ha prior to stem elongation. This represented an apparent recovery of 47-59% of the fertiliser N.

Nitrogen contribution from forage legumes in maize farming system in West Timor, Indonesia

Evert Hosang1, Jacob Nulik1, Debora Kanahau1, Yandri Abi1 and Lindsay Bell2 

1 NTT Assessment Institute for Agriculture Technology, Naibonat, Indonesia, Email: yulianeshosang@yahoo.co.id

2 CSIRO, 203 Tor St, Toowoomba Qld 4350, Australia.

Abstract

Maize is the important staple food crop cultivated in West Timor, Indonesia. However, maize productivity in West Timor is low (2.7 t/ha in 2010) compared to the national average (4.2 t/ha in 2010), due to low use of fertilisers. Integrating forage legumes into maize cropping systems has the potential to assist in improving maize nutrient supply and also provide high quality forage for livestock. The experiment was conducted on the island of West Timor, Indonesia to evaluate biomass production of herbaceous forage legumes in West Timor environment and to quantify potential nitrogen contribution from forage legumes in to maize in a rotation farming system. Butterfly pea, and Centro (both varieties) produced the most biomass (>6 t DM/ha), estimated shoot N was >150 kg N/ha and had the largest impacts on growth of a subsequent maize crop. Growing legumes and retaining their biomass on the field contributed significant nitrogen supply to the following maize crop, increasing N uptake by 30-50 kg/ha. Grain yields of a following maize crop were increased by 50% (1.4-1.6 t/ha) where legume was cut and removed, and by 90% (2.6-2.8 t/ha) where legume biomass was retained.  This study has shown that Butterfly pea and Centro, can be used in legume-maize rotation farming system in West Timor to improve soil fertility and increase maize production.

Annual crop legumes may not mitigate greenhouse gas emissions because of the high carbon cost of nitrogen fixation

David F Herridge1 and Philippa M Brock2

1 School of Environmental and Rural Science, University of New England, Armidale, NSW, 2351 Australia, www.une.edu.au, david.herridge@une.edu.au

2 Department of Primary Industries, “Tocal”, Tocal Road, Paterson, NSW 2421, Australia

Abstract

A large uncertainty in constructing grain cropping Life Cycle Assessments (LCAs) is the effect of a particular crop, or sequence of crops, on soil C stocks. We propose that the C cost of legume N2 fixation, estimated to be ca. 20 kg CO2/kg N fixed, will be expressed as reduced residue C returned to the soil and a possible net loss of soil C. Published pre-farm + on-farm greenhouse gas (GHG) emissions associated with N-fertilised wheat (60N) and canola (100N) and N2-fixing field pea, grown in Australia’s southern grains region, were combined with modelled effects of the same crops on soil C stocks. When effects of the crops on soil C were assumed to be neutral, canola had the highest emissions at 840 kg CO2-e/ha with field pea the lowest (530 kg CO2-e/ha). When estimated changes in soil C were included in the LCAs, canola’s GHG emission were totally offset (-100 kg CO2-e/ha), compared with a more than doubling of emissions for field pea to 1270 kg CO2-e/ha. This is somewhat counter-intuitive to current thinking that the substitution of fertiliser N with legume fixed N is an effective strategy for GHG emissions mitigation and highlights the need for simple, accurate methodologies for determining net changes in soil C for individual crops.

Monitoring the N release from organic amendments using proximal sensing

Daniele De Rosa1, David W. Rowlings1, Johannes Biala1, Clemens Scheer1, Bruno Basso2, Massimiliano De Antoni Migliorati1, Peter Grace1

1Institute for Future Environments, Queensland University of Technology, Brisbane, QLD 4000, Australia d.derosa@qut.edu.au

2Department of Geological Sciences and W.K. Kellogg Biological Station, Michigan State University, East Lansing, MI 48823, USA

Abstract

The use of proximal sensed vegetation indices can reduce the uncertainty linked to the N supplied by organic amendments in a horticultural field by detecting in-season crop N status. This research assessed the applicability of the three vegetation indices (VI) of NDVI, NDRE and CCCI to evaluate the in-season long term optimized strategy of applying organic amendments to a horticultural crop (lettuce) over two seasons. A conventional urea application rate (CONV) was compared with raw (Ma) feedlot manure and Ma combined with standard (Ma+CONV) and optimized urea rate (Ma+Op). NDRE most accurately predicted crop N status at the late stage of lettuce development with an R2 of 0.67 (RMSE 0.61), compared to 0.60 (RMSE 0.67) and 0.62 (RMSE 0.66) for NDVI and CCCI respectively. The in-season acquisition of crop reflectance proved to be a valid technique to determine the efficiency of an optimized combination between organic amendments and N-fertilizer.

Synthesized measurements of reactive nitrogen fluxes onto a forest using gradient and relaxed eddy accumulation method

Kazuhide Matsuda1, Takaaki Honjo1, Mao Xu1, Taiichi Sakamoto1

1 Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8509, Japan,

Email kmatsuda@cc.tuat.ac.jp (K. Matsuda)

Abstract

Synthesized measurements of vertical profiles and exchange fluxes of reactive nitrogen and relevant species, which are fine (PM2.5) and course aerosol components (NO3 , NH4+ SO42-) and gas components (HNO3, NH3, SO2), were carried out in a deciduous forest, suburban Tokyo.  Average vertical profiles in daytime and nighttime during the experiment showed the down ward fluxes (depositions). Differences of decreasing rates among the components were approximately in accordance with theoretical deposition velocities, except NO3 in PM2.5. Decreasing ratio of NO3 in PM2.5 from upper to lower canopy was significantly larger than that of SO42- in PM2.5 or NO3 in coarse aerosols. From the measurements by relaxed eddy accumulation, deposition velocities of NO3 in PM2.5 were larger than those of SO42- in PM2.5. The large deposition velocity was possibly caused by an effect of shifts in equilibrium between aerosol phase (NH4NO3) and gas phase (HNO3, NH3) near surfaces. It was indicated that NH4NO3 could be quickly removed as well as HNO3 in some conditions.

Microdialysis – a sensitive method for estimating plant-available N released during litter decomposition

Scott Buckley1, Richard Brackin1, Susanne Schmidt1

1 The University of Queensland, Brisbane, QLD, 4072, http://www.uq.edu.au, s.buckley3@uq.edu.au

Abstract

Given the importance of soil nitrogen (N) availability in controlling N supply of plants and microbes, accurate estimates of soil N forms are vital. However, common extraction methods disrupt the soil environment, biasing estimates of soil N availability. Microdialysis offers an alternative by sampling N fluxes with minimal disturbance, and here we compare ex situ soil microdialysis with traditional potassium chloride or water extractions in the context of crop litter decomposition. We amended soil microcosms with sugarcane (0.68% N) or soybean (2.51% N) litter at realistic rates (0.72, 5 and 14.3 mg C g-1 soil), quantified microbial activity parameters throughout a 30-day incubation period, and sampled N at day 30. In contrast to soil extractions, the diffusive fluxes generated with microdialysis facilitated a high-resolution snapshot of N availability. Microdialysis revealed that N was immobilised in the presence of sugarcane litter and was mineralised with soybean litter. Nitrogen immobilisation or mineralisation increased mostly with litter dose (although sensitivity varied somewhat between treatments) and in agreement with observed microbial activities. Such N processes were not apparent in soil extractions, indicating uniform N concentrations and forms across litter treatments. The only exception was the high soybean-amended treatments, in which total N increased. Our findings challenge the effectiveness of soil extractions to estimate plant-available N and resolution of N cycling processes in soils. Conversely, microdialysis represents a sensitive method for estimating the fine-scale N fluxes that are relevant to plants and insight into the factors regulating N cycling.

Nitrogen turnover and N2:N2O partitioning from agricultural soils – a simplified incubation assay

Johannes Friedl1, Clemens Scheer1, Johanna Trappe2, David W. Rowlings1, Peter R. Grace1

1Institute for Future Environments, Queensland University of Technology, Brisbane, QLD 4000, Australia. johannes.friedl@qut.edu.au,

2 University of Münster, Germany

Abstract

Nitrogen turnover and related denitrification losses are a major uncertainty when estimating N loss and replacement from agro-ecosystems, due to methodological constraints quantifying N2 and laborious analytical procedures. We present a novel, simplified incubation assay that combines the 15N gas flux method with the 15N pool dilution method, to quantify denitrification losses as a function of N turnover. This assay was tested using a pasture soil from sub-tropical Australia. N-fertiliser (35 µg g-1 soil) was applied either as a single (NH415NO3) or double (15NH415NO3) labelled treatment at 10 atom %, with a third treatment (NH415NO3) at 60 atom % to quantify N2 emissions. Gross rates of N mineralisation, nitrification and related N2 and N2O emissions were measured during 48 hours of incubation at 80% WFPS. Gross N production and gross N consumption was consistent with the directly measured N pool sizes, with denitrification losses (N2+N2O) at 7.0 + 1.4 µg N g-1 soil accounting for 62% of the calculated NO3 consumption. N turnover was dominated by mineralisation and nitrification, increasing the NO3 pool by a factor of 3. High NO3 concentrations shifted the N2:N2O ratio towards N2O, with 60 % of denitrification losses emitted as N2O. More than 25% of the applied 15N fertiliser was lost via denitrification, showing the significance of denitrification as a major pathway of N loss from agro-ecosystems. The simplified incubation assay proved to be an efficient tool to quantify N pools and emissions, and as such is an effective method to establish comprehensive datasets of denitrification losses linked to N turnover from agro-ecosystems.

Assessing the influence of rice roots and root exudates on nitrogen mineralization in soil using a novel protocol

Shamim Ara Begum1, Md. Abdul Kader*1,3, Steven Sleutel2, Stefaan De Neve2

1Department of Soil Science, Bangladesh Agricultural University, Bangladesh

2Department of Soil Management, Ghent University, Belgium

3School of Veterinary and Life Sciences, Murdoch University, Murdoch, 6150 Australia

Abstract

Classical nitrogen (N) mineralization experiments are done using uncropped soil, thus completely neglecting the influence of roots and root exudates. Therefore, experiments were conducted at two field sites in Bangladesh during ‘boro’ season (winter rice), using two rice cultivars (BRRI Dhan 29 and BINA Dhan6) to investigate the influence of rice roots and root exudates on N mineralization. Rice cultivars were transplanted in three replicated plots maintaining 25 x 15cm spacing along with three replicated uncropped plots as control. A novel method was used to identify the most suitable location to assess N mineralization in soil having actively growing rice plants. For this purpose, soil samples were collected from three locations in soil namely; 1) rhizosphere (0cm, at the rhizosphere), 2) middle of the two plants (7.5cm apart from rhizosphere) and 3) middle of two rows (12.5cm apart from rhizosphere). There was significant stimulatory effect of rice roots and root exudates on N mineralization at both filed sites. Significant influences of rice varieties were also observed, with BINA Dhan 6 having greater influence on N mineralization than BRRI Dhan 29. Sampling location also had a significant effect on measured N mineralization. The highest stimulatory effects of rice roots and root exudates were recorded when soil was sampled from rhizosphere. Sampling between the plants and between the rows had similar effects. In conclusion, rice roots and root exudates had a large influence on N mineralization and the best sampling location to determine the effects of actively growing rice roots and root exudates on N mineralization, was the rice rhizosphere.

New mobile, field based continuous-flow isotope ratio mass spectrometer system for automated denitrification studies

Daniel I. Warner1, Clemens Scheer1, David W. Rowlings1, Peter R. Grace1

1 Institute of Future Environments, Queensland University of Technology, Brisbane, QLD 4000 Australia, d.warner@qut.edu.au

Abstract

Terrestrial denitrification, the reduction of oxidized nitrogen (N) to nitrous oxide (N2O) and dinitrogen (N2), is considered the least well understood process in the global nitrogen cycle. This study introduces a novel continuous-flow isotope ratio mass spectrometer (IR-MS) system that can be deployed in the field and continuously measure N2 and N2O emissions. Utilizing the 15N gas flux method this system can provide a better understanding of terrestrial denitrification. The system was tested over 14 days on 2 different agricultural soils (vertosol and ferrosol) which were fertilized with the equivalent of 100 kg ha-1 of N added in the form of KNO3 where the N was 60 at.% 15N. Total gaseous N losses over the 14 day monitoring period resulted in 14.1± 0.53 kg ha-1 and 5.7± 0.92 kg ha-1 for the ferrosol and vertosol soils, respectively. These results clearly demonstrate the ability of the field based IR-MS to measure N2 and N2O emissions from denitrification under field conditions. This system has the potential to improve our understanding of terrestrial denitrification and improve efforts to reduce gaseous N emissions from agricultural systems.

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